Stochastic, spatial reaction-diffusion simulations have been widely used in systems biology and computational neuroscience. However, the increasing scale and complexity of models and morphologies have ...

This repository presents a state-of-the-art computational framework for modeling substance diffusion in biological tissues using the Generalized Finite Differences (GFD) method. The simulator provides ...

Exact simulation approaches for a class of diffusion bridges have recently been proposed based on rejection sampling techniques. The existing rejection sampling methods may not be practical owing to ...

This project implements an agent-based model (ABM) for simulating the diffusion of innovations [1] — such as green practices — through a social network. The model is based on a previously published ...